PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0049900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 793aa    MW: 88771 Da    PI: 6.2612
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0049900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.9e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Spipo1G0049900 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQHPPAQ--ELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************86666555..8************************************************..899 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Spipo1G0049900 219 KGQLLLGIRRA 229
                     999*****997 PP
2Auxin_resp1156.8e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFvv+++k+ k++  ++vsvGmRf+m fete++s rr++Gtv+++ d+dpv+WpnS+Wrs+k
  Spipo1G0049900 254 AAHAAATNSRFTIFYNPRASPSEFVVPLSKYAKSVFhTRVSVGMRFRMLFETEECSVRRYMGTVTDIGDFDPVHWPNSHWRSVK 337
                     79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-21127228No hitNo description
SMARTSM010191.1E-24128230IPR003340B3 DNA binding domain
PfamPF023626.6E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59128230IPR003340B3 DNA binding domain
PfamPF065071.9E-32254337IPR010525Auxin response factor
PfamPF023091.3E-6699788IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-7700776No hitNo description
PROSITE profilePS5174521.972702786IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MKLATLDLGQ RTPEGGEKRC LNSELWHACA GPLVSLPTVG TRVVYFPQGH SEQVSVSTNK  60
EVEGRLPNYP NLAPQLICQL HDATMHADAE NDEVYAQMTL QPLSSQEQKD IYLPAEIVLQ  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QHPPAQELVA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKG QLLLGIRRAN RAQTMTPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVVP LSKYAKSVFH TRVSVGMRFR  300
MLFETEECSV RRYMGTVTDI GDFDPVHWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHQ GMPPAPDSRG DEGYTFVWPR GYLGEHSLQP QNFLQVGRGP  420
YVQQRFEPAL LGNDPDQYQA MAAAALRDVG SAEPLKQQLF RFQQPLQASQ EPCRPNASLQ  480
QQIAQQMRSQ HALSILPPTL SDHPHQTLPD QFHQSIIRQN SQQQQTYVEE FVIPGNQVQQ  540
SHPPFASLGQ KSVFPLSGTD FPPCVQSMLG SMVHEGRFNQ VNFDKFAQPI LNEVDKQTWE  600
QKFAAPETAG FGNGESLPPF PGKDGPLEQE NCNVDSQNHT LFGVNIDSSP LLSNLVPSVA  660
NSSAEASNMP CAASCFQNSL YAVDEFSSVL QNAGEADPPP RRTFIKVYKS GSVGRLLDIT  720
QFRNYSELRE ELGQMFGIEG QLEDPLRSGW QLVFVDREND VLLLGDDPWD AFVNNVWYIK  780
ILSSEDVQKM GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1551535845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019711032.20.0auxin response factor 12-like isoform X1
RefseqXP_029116083.10.0auxin response factor 12-like isoform X1
RefseqXP_029116084.10.0auxin response factor 12-like isoform X1
RefseqXP_029116085.10.0auxin response factor 12-like isoform X1
RefseqXP_029116086.10.0auxin response factor 12-like isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A1D1YBU40.0A0A1D1YBU4_9ARAE; Auxin response factor (Fragment)
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8