PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0051500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 213aa    MW: 23953.2 Da    PI: 8.0335
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0051500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.87.7e-1616452655
         G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    +AtPk +l+lm+v gLt++hvkSHLQ+YR+
  Spipo1G0051500 16 EATPKLVLQLMDVRGLTISHVKSHLQMYRS 45
                    69***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-51447IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-141647IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-101646IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDKAYEISSH SFVVPEATPK LVLQLMDVRG LTISHVKSHL QMYRSMKNET NKQGTGFFSL  60
DPLSSRKAIH LIHTTVKGES NLLSTATLRQ MSNTRKAHFG RFLLDRARLE TTTPLQVGLR  120
RGHGICGEVA SPYCFDENLQ GRTVEWGIKE SFRWQKEVEA DFLPDDHVRQ FHALDYLLEE  180
SGSFKNHGDS WACSKEGRLN LELSMSICSG GP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.19e-13G2-like family protein