PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0055700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 270aa    MW: 28166.4 Da    PI: 8.6099
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0055700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-20117177257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t++ql++Le  F +   +ps+++++e+++ l    +++e++V++WFqNrRa+ k+
  Spipo1G0055700 117 RQRWTPTPTQLQVLEGIFDQgIGTPSKQKIKEITSALanhgQISETNVYNWFQNRRARSKR 177
                     89*****************99**************************************97 PP
2Wus_type_Homeobox101.27.3e-33116179265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp+Q+++Le ++++G+ tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq
     Spipo1G0055700 116 SRQRWTPTPTQLQVLEGIFDQGIGTPSKQKIKEITSALANHGQISETNVYNWFQNRRARSKRKQ 179
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-16110182IPR009057Homeodomain-like
PROSITE profilePS5007114.333113178IPR001356Homeobox domain
SMARTSM003891.2E-11115182IPR001356Homeobox domain
SuperFamilySSF466891.11E-16115180IPR009057Homeodomain-like
PfamPF000466.8E-18117177IPR001356Homeobox domain
CDDcd000862.63E-13117179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTWVHRGGGA GDGGGRKDGV GNGEEVKLGG GTGGAGMGAG ASVGGGAVEG LLCVKVMTDE  60
QMEVLRKQIS VYATICEQLV EMHRAITARQ DSIAEMRLGS VYCDPLAASG GHKMTSRQRW  120
TPTPTQLQVL EGIFDQGIGT PSKQKIKEIT SALANHGQIS ETNVYNWFQN RRARSKRKQT  180
VEGRSNAESE VDTEIDSSKE KKGRGDRFGA LTGSSPLNGP ANAPASFGRA PFYDSAVGNS  240
RGDQTTGPME MSASYRPSGC GGSGYGMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812362.17e-87WUSCHEL-related homeobox 8-like
SwissprotQ5QMM34e-78WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1D1YR487e-91A0A1D1YR48_9ARAE; WUSCHEL-related homeobox 8
STRINGXP_008812362.13e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-66WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]