PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0056000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 187aa MW: 21354.5 Da PI: 10.6059

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0056000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.9	1.7e-27	13	62	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l +lskyF+ pi++A+++L+v++TvLKr+CR++GI+RWPhRkiksl Spipo1G0056000 13 SNITLAELSKYFEVPIAEASRHLNVGQTVLKRKCREFGIPRWPHRKIKSL 62 69**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.917	1	82	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-23	14	62	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKQNKRATIE DISNITLAEL SKYFEVPIAE ASRHLNVGQT VLKRKCREFG IPRWPHRKIK 60 SLDTLIQDLQ VVVEERRGQD ESAAAAEKQR LLEMEKQSIK KDPVMDLQSE TKRFRQDIFK 120 RRHRLKALVQ QGTDGSAMGD DLLYFVRSVN SPAAAAAARR EDDQRNHLKG RPQKENPPRV 180 MTPALS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603606.1	7e-52	protein RKD5 isoform X2
Refseq	XP_021676684.1	1e-51	protein RKD5
Swissprot	O81791	2e-40	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251LWD7	2e-50	A0A251LWD7_MANES; Uncharacterized protein
STRING	cassava4.1_024901m	5e-51	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-42	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo1G0056000

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]