PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0060400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BBR-BPC
Protein Properties Length: 336aa    MW: 37407.5 Da    PI: 9.9961
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0060400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind383.53.2e-11713351301
       GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                     mdd+g+r+  r+k  +y+        p++++k++++++lm+++aerd++i+ernlalsekk a+aerdma lqrd+a+ ern+a++erd++++al
  Spipo1G0060400   1 MDDSGQRDngRQKQdQYKgvhtqwmmPQHQMKDHQTIKLMTIMAERDNAIQERNLALSEKKTALAERDMAILQRDAAIGERNNAIMERDSAIAAL 95 
                     99***99999999999*9******99778****************************************************************** PP

       GAGA_bind  85 llvensla.....salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
                     ++++++ +       +p+g+++ +g+k+i+++q    +  +ql+d +++ r+++++ea+pi+   e+a +++++k++ r++++ ++  k++ k s
  Spipo1G0060400  96 EYARENGMsgnggPGCPPGCTIPRGSKHIHHHQLsNMHppSQLSDASYGHRDMHISEAFPISVYSENAVKARRVKRS-RKEVKVQPGPKRAPK-S 188
                     998777666988889******************95445899*********************999999888888733.333333333333333.2 PP

       GAGA_bind 172 ekskkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                     +k+++   ++ ++ +                  +k+e+k++dl+ln+v++De+t+P+PvCsCtG+l+qCYkWGnGGWqSaCCtttiS+yPLPv++
  Spipo1G0060400 189 QKKRRGGGEDLNK-HltlakghggedlnkevsaMKHEWKNQDLGLNHVAYDETTMPAPVCSCTGTLHQCYKWGNGGWQSACCTTTISMYPLPVMP 282
                     2222222222222.134667889999********************************************************************* PP

       GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++r+aR++grKmS++af+klL++LaaeG+dl+ p+DLkdhWAkHGtn+++ti+
  Spipo1G0060400 283 NKRHARVGGRKMSGSAFTKLLSRLAAEGHDLAMPLDLKDHWAKHGTNRYITIK 335
                     ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1551335IPR010409GAGA-binding transcriptional activator
PfamPF062172.0E-1021335IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDDSGQRDNG RQKQDQYKGV HTQWMMPQHQ MKDHQTIKLM TIMAERDNAI QERNLALSEK  60
KTALAERDMA ILQRDAAIGE RNNAIMERDS AIAALEYARE NGMSGNGGPG CPPGCTIPRG  120
SKHIHHHQLS NMHPPSQLSD ASYGHRDMHI SEAFPISVYS ENAVKARRVK RSRKEVKVQP  180
GPKRAPKSQK KRRGGGEDLN KHLTLAKGHG GEDLNKEVSA MKHEWKNQDL GLNHVAYDET  240
TMPAPVCSCT GTLHQCYKWG NGGWQSACCT TTISMYPLPV MPNKRHARVG GRKMSGSAFT  300
KLLSRLAAEG HDLAMPLDLK DHWAKHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803316.11e-163barley B recombinant-like protein D isoform X2
RefseqXP_010933934.11e-164barley B recombinant-like protein D
SwissprotQ5VSA81e-136BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A1D1XWN00.0A0A1D1XWN0_9ARAE; Barley B recombinant-like protein D
STRINGXP_008803315.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-113basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]