PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0060600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 141aa    MW: 15758.4 Da    PI: 9.9482
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0060600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1217.5e-074279643
                    HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43
                     e+r   NR +  r+ +RK  +i +Le k+++L+ e  
  Spipo1G0060600 42 LEKRSLANRRSVARYKERKTRYISQLEYKAQTLTFETV 79
                    699******************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077169.8E-54283IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-44380No hitNo description
SuperFamilySSF579591.37E-54383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDSKAGGTKT NGADGRENES DSSLNEIAYS SEKQMLNAGS SLEKRSLANR RSVARYKERK  60
TRYISQLEYK AQTLTFETVQ IEQLHQRAGA VTRSDVSSGG HDNYVTVYEE REGKRLWWFL  120
SASRIRRFGG GSDVYPAPKV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.22e-09bZIP family protein