PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0068800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 431aa    MW: 47906.2 Da    PI: 5.0022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0068800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13188231755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++Er+RR+++N+++  Lr+l+Pk +      K++Ka+iL  A+e++k+Lq
  Spipo1G0068800 188 MAERKRRKKLNDRLYDLRSLVPKiS------KMDKASILGDAIEFVKDLQ 231
                     79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-15178235No hitNo description
PROSITE profilePS5088815.783181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18183243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-18188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11188231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKPQVPEDQR TIELLVSQFV GQSPPTAFAA DCQLHRDLDG YVGIPDEHPA WGIQPVPSCD  60
HRGFPWDPPS DQSRLCVSPL DLFEGHREDD AFFEGSSDSV HSDKRAFPFD PLPGFHQPVG  120
RPAAPVAYTS FGDSTVSREL GCHDKESVKQ EGEGRTDSFL DGSDQMGDDD DEQKTGRSER  180
RPSCKNLMAE RKRRKKLNDR LYDLRSLVPK ISKMDKASIL GDAIEFVKDL QNQVKKLQDQ  240
LEETTPGDDG AEEFDAGDAP HHKNDNNDNH GTQQVDNKNR TGTASPRSSS MMMSSNTSKD  300
PRRSPIVEKK ENQMEPQVEV NQVGANKFFL KVFCEHRRGG FVRLMEAMAS LGFDVVNVNV  360
TTSEPLVLNV FEVEVRRGAS VPTLLPSTTS EAAFAPLRVQ KRDSEVVQAD QVRSSLLRLA  420
MNSDDSRLQL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZEA71e-94A0A1D1ZEA7_9ARAE; Transcription factor ABORTED MICROSPORES (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-45bHLH family protein