PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0075800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 290aa    MW: 32642.3 Da    PI: 8.4351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0075800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.36.8e-45101372128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPt+eel+++yLk  v+g+kl+  +vi+  +iy+++P++Lp  ++++e+ewyfF++rdk +++g +++r+t++g+Wkatg+d+++ s  
  Spipo1G0075800  10 LPGFRFHPTEEELLDFYLKGAVQGNKLSS-SVIEFHNIYRHDPRELPGLARTGEREWYFFVPRDKLSSNGGKPKRTTERGFWKATGSDRPIRSVs 103
                     59************************999.89***************8888999*************************************9987 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++l+glkktLvfy+grap+g ktdW+m+eyrl
  Spipo1G0075800 104 dPNQLIGLKKTLVFYEGRAPRGLKTDWIMNEYRL 137
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.0959159IPR003441NAC domain
SuperFamilySSF1019417.32E-5310159IPR003441NAC domain
PfamPF023656.1E-2411137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEGGWSEINL PGFRFHPTEE ELLDFYLKGA VQGNKLSSSV IEFHNIYRHD PRELPGLART  60
GEREWYFFVP RDKLSSNGGK PKRTTERGFW KATGSDRPIR SVSDPNQLIG LKKTLVFYEG  120
RAPRGLKTDW IMNEYRLPDT ISSPQLPKGD IVLCKIYRKA KSMKELEKRV APEGKSRPAL  180
CVTSGVETYS ASATSSSGRD ISVQAPPVFP LLEPEVSTKE TTVEMDAEAE VSSVPRILDV  240
AKRAMKFPTD LGMLQVPPRS DFDWMADPNL MRTPWLDHIS PCYANIFNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-43615911168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918221.27e-99NAC domain-containing protein 22
RefseqXP_020093751.15e-99NAC domain-containing protein 35
SwissprotQ10S655e-81NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A1D1Y9N01e-110A0A1D1Y9N0_9ARAE; Putative NAC domain-containing protein 94
STRINGXP_008813634.12e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.18e-83NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]