PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0077400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 189aa MW: 21625.1 Da PI: 11.2835

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0077400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	22	73	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h + Er RR+ +N+ ++ Lr ++P+ ++ + a+i +++Y+k+L+ Spipo1G0077400 22 QRMTHIALERSRRKLMNEHLSSLRHIVPPH---FIRRGDQASIIGGTIKYVKQLE 73 79*************************9...9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.94E-7	20	70	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.7E-13	20	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.002	21	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-15	21	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	22	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	27	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGKRKRKRSQ PPTKNVKEVE NQRMTHIALE RSRRKLMNEH LSSLRHIVPP HFIRRGDQAS 60 IIGGTIKYVK QLEQLLQSLL VKRGERDRRH TYFSCTSPLT SIYRFREFFP SPQYTLHTSQ 120 SPTIMEANVA ATVVQSHVNL TVLSRQKPGQ LLRAISELEN LHLSVLHINV TSLDSSVLYS 180 LNLKVPPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006829211.1	2e-54	transcription factor bHLH94 isoform X1
Refseq	XP_020532222.1	1e-54	transcription factor bHLH94 isoform X3
Refseq	XP_020532223.1	2e-54	transcription factor bHLH94 isoform X4
Refseq	XP_020532224.1	1e-54	transcription factor bHLH94 isoform X5
TrEMBL	A0A3S3N9A7	8e-55	A0A3S3N9A7_9MAGN; Transcription factor bHLH67 isoform X1
STRING	ERM96627	7e-54	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo1G0077400