PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0082800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

SBP

Protein Properties

Length: 183aa MW: 19378 Da PI: 8.9243

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0082800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	67.6	2.6e-21	123	170	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+egC +dl++ak+yhr+hkvCe hs+a++v+v+gl++rfCqqCsr Spipo1G0082800 123 RCQAEGCGEDLNRAKHYHRKHKVCELHSRAAAVVVHGLSRRFCQQCSR 170 6**********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.4E-21	119	170	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.025	121	182	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-20	122	171	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-15	124	170	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSVTHSGEV AVTEQPHHRR QICPFYDSTG VDLFSGLSTL TPPPPPLAIS PMPVDDFAFR 60 QGDASWTPSL TELPPATRIG LNLGMRTYFA SAPVGEPVQP GAKVCKRSGG GSGGVVATAT 120 TARCQAEGCG EDLNRAKHYH RKHKVCELHS RAAAVVVHGL SRRFCQQCSR QGTHVKGPPV 180 PT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	8e-17	124	170	6	52	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_973738.1	7e-29	squamosa promoter binding protein-like 8
Swissprot	Q8GXL3	1e-28	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A1D1XIM9	2e-38	A0A1D1XIM9_9ARAE; Squamosa promoter-binding-like protein 8 (Fragment)
STRING	AT1G02065.1	5e-27	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2375	35	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	2e-27	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Spipo1G0082800

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]