PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0096800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 186aa    MW: 19733.1 Da    PI: 4.8676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0096800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.3e-162472255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr  +++g+Wv+eIr+p++   ++r++lg++ +ae+Aa a++ a+++l+g
  Spipo1G0096800 24 TYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPSAEMAAVAYDVAALALKG 72
                    69***6..668*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-292486IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-272482IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-182482IPR016177DNA-binding domain
PfamPF008472.0E-92472IPR001471AP2/ERF domain
PROSITE profilePS5103220.5082480IPR001471AP2/ERF domain
CDDcd000184.67E-282582No hitNo description
PRINTSPR003675.3E-72536IPR001471AP2/ERF domain
PRINTSPR003675.3E-76282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRLFVVGGG TQATATAAER HHPTYRGVRS RSGKWVSEIR EPRKTTRIWL GTYPSAEMAA  60
VAYDVAALAL KGGDAILNFP ESISSRPVPA STSPSDIRSA AAAAAAGLVH PKVETTEEPA  120
AEERARTPTG QASDPFVDEE EMFNLPHLLE SMAQGMLMSP PLLSPATHSD DSPDVSDCES  180
LWSYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142585668ATERF1
3gcc_A2e-142585668ATERF1
5wx9_A5e-1422841276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803287.12e-64ethylene-responsive transcription factor ERF027-like
RefseqXP_010919217.11e-64ethylene-responsive transcription factor ERF027
SwissprotQ9CAN93e-44ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A1D1YW154e-70A0A1D1YW15_9ARAE; Ethylene-responsive transcription factor ERF026
STRINGXP_008803287.16e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-35ERF family protein