PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0100900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 237aa MW: 25297.3 Da PI: 8.4781

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0100900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	43	101	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++ Spipo1G0100900 43 EHALNCPRCQSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRT 101 6789*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	39	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-34	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDTAQWPQDM GLTKSSMEGM MVPSGCTTAR PQLMERRPRP PREHALNCPR CQSTNTKFCY 60 YNNYSLSQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR TGDFCSTVSP NPLTCSSAAS 120 SGAQSAMDLL RGGVSCKGMS PFLPLMMAPD GGTVYSAGFG LQDFRSSSIN FPVDGIAGDG 180 GYGNVQDGSG RLFFPFEDLR RQVSSGDADV DQSRGQGGDP SVFWNGVIGG GGGASW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252779.1	2e-72	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A1U7ZI96	5e-71	A0A1U7ZI96_NELNU; dof zinc finger protein DOF4.6-like isoform X1
STRING	XP_010252779.1	8e-72	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	4e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo1G0100900