PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0108300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 226aa    MW: 24889.3 Da    PI: 10.2944
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0108300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151656646
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                       rqv+ skRr g++ KA ELS LCdae av+++s+  k+
  Spipo1G0108300 16 RAPRQVSISKRRRGLFRKACELSALCDAESAVLVMSPGSKV 56
                    5679********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-10162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.25363IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-11525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17777IPR002100Transcription factor, MADS-box
PfamPF003195.7E-151358IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MARAPRREHV SRITLRAPRQ VSISKRRRGL FRKACELSAL CDAESAVLVM SPGSKVFSLG  60
DPDVNTVVDR FLDYATRQVP APEAGHHGWK RGGAAMVSGA ERGRLQPGGR IRHHGRRILI  120
EELYRLHAKR ESWLVAANAR SEELMAGIRE MQNQLPHRWA AKVEELELTE LEEMTDALED  180
LAVRVSQVIS GRQAQEGREA SWNPAGSSND AAVSAGIMSP SWAKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18AGAMOUS-like 62