PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0108400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 255aa    MW: 27344 Da    PI: 8.9136
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0108400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.2e-161257247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    ri     rqv+ skRr g++ KA ELS LCdae av+++s+ gk++
  Spipo1G0108400 12 RITPRAPRQVSISKRRRGLFRKACELSALCDAESAVLVMSPGGKVF 57
                    5666678************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-12162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.049363IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-12525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-18777IPR002100Transcription factor, MADS-box
PfamPF003196.9E-161258IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MARAPRREHV SRITPRAPRQ VSISKRRRGL FRKACELSAL CDAESAVLVM SPGGKVFSLG  60
DPDVNTVVDR FLDYVARQVP APEAGHHDGE GGGAAMVSGA EGRRLQPGGP TGHHARRILI  120
EELYRLHAQQ ESWLVAANAR SEELMAGIRE MQSRLPHRWA VKMEELQLTE LEEMTDALED  180
LAVRVSQVIS GRQAQLGGPP DQRSSTGFPA PPPNLRHQAV LSAGLGREAS CNPTGSSNAA  240
AVSAGIMSPF QAKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-18AGAMOUS-like 62