PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0109400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 337aa    MW: 36286.1 Da    PI: 8.2444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0109400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.7e-161557547
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     +  rqv+fskRr+g++KK  ELS LC++e av++ s+ +kl+
  Spipo1G0109400 15 RSAPRQVSFSKRRQGLFKKVCELSALCGTESAVLVQSPGDKLF 57
                    5677**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-14162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.376363IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-11525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-18676IPR002100Transcription factor, MADS-box
PfamPF003193.4E-161358IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MARAPRRVHV ARILRSAPRQ VSFSKRRQGL FKKVCELSAL CGTESAVLVQ SPGDKLFSLG  60
EPDVDTVVDR FLDFVDRRAQ AQEVPQEAGE PGGAAVAVGG ARRRQRGRGP VRQHGQRRLV  120
VEELYRTLAM QDNWLEAADA RLEELRAGIR EMQAQLPHRW AAKVEDLEPA EAAEMVDALQ  180
VLSMRVSQVL AARQAQEGLL PGQASSSSYP PPPSSNPWQL LPDGSMAVDA APTMPAMGVF  240
QPPPFGPSPS TAHQLPWLDD DPTGGASMAG NSRVFGRIAS STVFRDHDGM MAGSSSGYQP  300
LPPPPPPPPP PLFGNPFPSR RDGEGPSRGY GPPNFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-19AGAMOUS-like 62