PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0113500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 237aa    MW: 26762.4 Da    PI: 7.9564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0113500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-0699119626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C  f+r G C+ G  C+F+Hg
  Spipo1G0113500  99 CAEFRRAGACSKGQLCQFSHG 119
                     99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.2693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.45593121IPR000571Zinc finger, CCCH-type
SMARTSM0035613129152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
SCSRSLPLWH LMLLQRMRAF SVAQVELDVT SSCPPMVPQF PAPEGQSLEE SDEFRMYCFK  60
IKRCSKTRSH DWTQCPYAHR GEKARRRDPR KFPYHGVSCA EFRRAGACSK GQLCQFSHGV  120
FEFWLHPARY RTRPCKAGTQ CQRKVCFFAH TPEQLRPLSC DGCGCYADWR GQRGCCGRGL  180
GAVREEPSPS SSPSSFDKDC TDVTEDIRRL EIAGGDVGLG EEPDLPDIDW ICDLVK*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275497.14e-58PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650362e-53C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A0K9Q4D82e-69A0A0K9Q4D8_ZOSMR; Zinc finger CCCH domain-containing protein
STRINGXP_010275497.12e-57(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-54C3H family protein