PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0114200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 258aa    MW: 27878.2 Da    PI: 8.0891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0114200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1996146255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++++ eAa+a+++a+ +++g
  Spipo1G0114200  96 RYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDSPVEAARAYDRAAFQMRG 146
                     7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-3296155IPR001471AP2/ERF domain
CDDcd000181.99E-2896155No hitNo description
PROSITE profilePS5103223.81596154IPR001471AP2/ERF domain
PfamPF008474.0E-1496146IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2296155IPR016177DNA-binding domain
SMARTSM003801.6E-3996160IPR001471AP2/ERF domain
PRINTSPR003679.7E-1497108IPR001471AP2/ERF domain
PRINTSPR003679.7E-14136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAGSEASFH IELIKQHLLG DPLLSPRAPP FLSGEPIFEL FPEGHRSPSS SSSSSSSSSS  60
SGSLDSRPSL LIAKPRALNV EWADSSSAST AEDFRRYRGV RQRPWGKYAA EIRDPKRRGS  120
RVWLGTYDSP VEAARAYDRA AFQMRGSKAI LNFPNELSSS ADWPAPISEG HRQAETGCCP  180
KRERSPECQV EVDQVFRPAK RERGEDGSAA TPSPPLTPSS WNTIWGSGDP MGGIFSLPPL  240
SPLSPHPSMG FAQVMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2684158276Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919711.12e-59ethylene-responsive transcription factor ERF105
TrEMBLA0A1U8BFY15e-53A0A1U8BFY1_NELNU; ethylene-responsive transcription factor ERF105-like
STRINGXP_010275423.18e-54(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.15e-32ethylene response factor 104