PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0125800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 221aa MW: 24402.6 Da PI: 8.6722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0125800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H Spipo1G0125800 60 FVCEICSKGFPRDQNLQLHRREH 82 89*******************99 PP
2	zf-C2H2	14.7	9e-05	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k + s+ + H r + Spipo1G0125800 136 YECEHCSKKYAVLSDWQAHVRAC 158 99******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	59	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.54E-8	59	82	No hit	No description
SMART	SM00355	0.0048	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	60	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-6	127	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.54E-8	131	156	No hit	No description
SMART	SM00355	50	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEESGSAGSV EAGGDGGSYG EQEAQKTAAS KRKRNPPGMP DPDAEVVALS PEALMATNRF 60 VCEICSKGFP RDQNLQLHRR EHNLPWNLRG SGDKPRKRVY VCPVSTCVYH SPARALGDLT 120 GIKKHFFRKH GGEKKYECEH CSKKYAVLSD WQAHVRACSG FPVFRRRHKE PDGETGKDSY 180 ELNSATALGC RQLCCSSNSK LWANEVISAM HIRCKCIFDA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153412.1	8e-69	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_019153413.1	8e-69	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_019153414.1	8e-69	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	2e-66	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1D1XKK7	9e-84	A0A1D1XKK7_9ARAE; Zinc finger protein MAGPIE
STRING	XP_010259853.1	2e-66	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-66	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Spipo1G0125800

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]