PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0015200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 193aa    MW: 21905.3 Da    PI: 4.9925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0015200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-153676547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ E++  +++++ lG++ W++Ia++++ gRt++++k++w+++
  Spipo20G0015200 36 SEYEEQVVIKLHATLGNR-WSKIAAHLP-GRTDNDIKNHWNTH 76
                     6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.193126IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-51325IPR009057Homeodomain-like
SuperFamilySSF466893.42E-211386IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-242682IPR009057Homeodomain-like
PROSITE profilePS5129426.4472781IPR017930Myb domain
SMARTSM007172.4E-133179IPR001005SANT/Myb domain
PfamPF002498.4E-143676IPR001005SANT/Myb domain
CDDcd001673.37E-103977No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
EIGLYHFTSG LLRCGKSCRL RWTNYLRPDL KRGLLSEYEE QVVIKLHATL GNRWSKIAAH  60
LPGRTDNDIK NHWNTHIKKK LKTMGIDPLT HQPIESIDND PPKCQEEEEA MSEKNRLEID  120
NPGEGNEEGE RDSASASHSS SASSSNSPTF VEEHKMPFVC WPESPVWSYD ANAWDFISDE  180
DDGKMTVDLF SGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21138340110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917650.11e-53transcription factor MYB20
RefseqXP_027330053.12e-53transcription factor MYB20-like
TrEMBLA0A1J6KI211e-51A0A1J6KI21_NICAT; Myb-related protein pp2
TrEMBLA0A2P5VQ109e-52A0A2P5VQ10_GOSBA; Uncharacterized protein
TrEMBLM0T0Y65e-52M0T0Y6_MUSAM; Uncharacterized protein
STRINGXP_006482113.13e-52(Citrus sinensis)
STRINGGSMUA_Achr5P23110_0018e-53(Musa acuminata)
STRINGGSMUA_Achr7P12520_0012e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1419722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-52myb domain protein 20