PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0017500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 147aa    MW: 16950.3 Da    PI: 10.8491
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0017500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-2060119357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eqleeLee +++ +r+p a++++ +A++l    +++ ++V++WFqN++a+e++
  Spipo20G0017500  60 SRWNPTREQLEELEEIYKRgTRTPPAHQIQLIAAELrrygRIEGKNVFYWFQNQKARERQ 119
                      7*****************99**************************************97 PP
2Wus_type_Homeobox105.63.2e-3459120364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +RW+Pt eQ++ Lee+yk+G+rtP++++iq i+aeL++yG+ie+kNVfyWFQN+kaRerq+
    Spipo20G0017500  59 GSRWNPTREQLEELEEIYKRGTRTPPAHQIQLIAAELRRYGRIEGKNVFYWFQNQKARERQR 120
                        68***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.76E-1454125IPR009057Homeodomain-like
PROSITE profilePS5007111.64555120IPR001356Homeobox domain
SMARTSM003893.3E-557124IPR001356Homeobox domain
PfamPF000464.8E-1860119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-960119IPR009057Homeodomain-like
CDDcd000862.04E-561115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPMVGNCTSD PLRSRKLRML ATAGLSSCIY RIAHQTKSLP PTGHHFLKNV ADHQKHRSGS  60
RWNPTREQLE ELEEIYKRGT RTPPAHQIQL IAAELRRYGR IEGKNVFYWF QNQKARERQR  120
LRRQLEADSP PEKSNREDLG AVLPPT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125268.11e-33WUSCHEL-related homeobox 1
RefseqXP_027168665.11e-33WUSCHEL-related homeobox 1
TrEMBLA0A068TQP45e-32A0A068TQP4_COFCA; Uncharacterized protein
STRINGVIT_01s0011g05020.t012e-31(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.12e-23WOX family protein