PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0019100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 206aa    MW: 21812.3 Da    PI: 7.6683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0019100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172675255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g Wv+eIr p+   +r+r++lg++ tae Aa+a++aa ++l+g
  Spipo20G0019100 26 QYKGVRMRS-WGTWVSEIRAPN---QRTRIWLGSYSTAEAAARAYDAALLCLKG 75
                     7*****998.**********93...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-172583No hitNo description
PROSITE profilePS5103221.722683IPR001471AP2/ERF domain
PfamPF008471.9E-102675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-302684IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-192684IPR016177DNA-binding domain
SMARTSM003808.1E-342689IPR001471AP2/ERF domain
PRINTSPR003676.8E-92738IPR001471AP2/ERF domain
PRINTSPR003676.8E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVKEVSAGTI NDAPSFHSDR GRRKKQYKGV RMRSWGTWVS EIRAPNQRTR IWLGSYSTAE  60
AAARAYDAAL LCLKGSSANL NFPSTSAHHH HSAVVMSPKS IQRVAAAAAA AAAAAAAAPH  120
SSSSPISFPA TRPTSPPSTS SSETTTVCVE ELLLNESGLE GLLTDFGGLP SSPKYGDPML  180
SGWDDFSPPM DQWGEEGGAN LWNFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-142583463ATERF1
3gcc_A7e-142583463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386376.16e-41ethylene-responsive transcription factor ERF014
RefseqXP_011027567.16e-41PREDICTED: ethylene-responsive transcription factor ERF014-like
TrEMBLA0A3S4NKW31e-41A0A3S4NKW3_9MAGN; Ethylene-responsive transcription factor ERF014-like protein
STRINGPOPTR_0002s08610.12e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-27ERF family protein