PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0023900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 223aa    MW: 25206.7 Da    PI: 11.0621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0023900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.35.7e-2024107286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W ++e+ +Li+a++e++++l+rg+lk+++Weev++++ ++ g++r   s +qC++k+e+l++ry+++ ++ ++     ss++ +fd+++
  Spipo20G0023900  24 WLERETALLIDAYEERWSSLKRGQLKAHQWEEVASAVaAKLGLSRpskSGTQCRHKIEKLRQRYRAELQRGGS-----SSRWTFFDRID 107
                      99*********************************997677887666699***************99998887.....679*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2492384IPR017877Myb-like domain
PfamPF138373.4E-2123109No hitNo description
SMARTSM005953.7E-631114IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MISQEASPAA PPPARKHNGP GKPWLERETA LLIDAYEERW SSLKRGQLKA HQWEEVASAV  60
AAKLGLSRPS KSGTQCRHKI EKLRQRYRAE LQRGGSSSRW TFFDRIDRME RGPLPISVRP  120
PPPPPPPPSP PRRSGDGGDG ESAEAEEDWG RAAMQVAAAV RRFREGLGRL QKRSLEMVIE  180
MERDWTEMET RRTEMVIESQ RRLVEAIAMA FSAKKPRRSH RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580937.12e-58trihelix transcription factor ASIL1-like, partial
TrEMBLA0A2I0X7B41e-50A0A2I0X7B4_9ASPA; Uncharacterized protein
STRINGGSMUA_Achr6P04170_0019e-49(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-22Trihelix family protein