PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0027700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 257aa    MW: 27746.5 Da    PI: 10.3081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0027700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1995145256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta eAa a++ a+ kl+ge
  Spipo20G0027700  95 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAMEAAMAYDDAAFKLRGE 145
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-3194153No hitNo description
SMARTSM003803.0E-3895158IPR001471AP2/ERF domain
PROSITE profilePS5103222.68295152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3195153IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2395153IPR016177DNA-binding domain
PfamPF008471.7E-1396145IPR001471AP2/ERF domain
PRINTSPR003671.5E-1096107IPR001471AP2/ERF domain
PRINTSPR003671.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRTGAGGLTR KMAAVMDVYS SMFRTMAAEE QFFSTAGEPQ IGLSRLNPAQ LQQVQSQMAL  60
FQRKNGHQSF SLSFISPRPQ AMKNAGGGSS GAGKLYRGVR QRHWGKWVAE IRLPRNRTRL  120
WLGTFDTAME AAMAYDDAAF KLRGELARLN FPHRRRNGSP AATADTPASP LPAAVDAKLQ  180
AICRSMAGGL SPAAPPPSSA AALDKSPSES PSPPTSPEPD MGSLKFSEPA WDEAEGLLLR  240
KYPSWEIDWD AILSPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2093158369ATERF1
3gcc_A8e-2093158369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020687212.12e-65ethylene-responsive transcription factor RAP2-13-like
SwissprotO656652e-54ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E43e-54RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2I0WZ474e-64A0A2I0WZ47_9ASPA; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A427B5E52e-64A0A427B5E5_ENSVE; Uncharacterized protein
TrEMBLA6YT273e-64A6YT27_9ASPA; DRE-binding protein DREB1
STRINGPavir.Da01302.1.p6e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-40related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]