PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0034900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 292aa    MW: 30517.3 Da    PI: 9.0264
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0034900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.1e-3067126457
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpse......geegtaaalkCaACgCHRnFHRrev 57 
                      ++Y+eC++NhAa+lGgha+DGCgEfmps+      ++ g+++al CaACgCHRnFHRr  
  Spipo20G0034900  67 AVYRECMRNHAAALGGHALDGCGEFMPSPvpvsvsDAAGEPSALACAACGCHRNFHRRLL 126
                      58*************************9633332133477*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-1168124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.8E-2668124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.15369125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-2669124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.37E-15161228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-26169229IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-22171226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELHQYLEPP PQPQQQQGRR PWPPPKEMAA DQDVKPRGVL PLPLSNGVLG KKTAPAAAPS  60
SPPPPPAVYR ECMRNHAAAL GGHALDGCGE FMPSPVPVSV SDAAGEPSAL ACAACGCHRN  120
FHRRLLRREE QEGDGRSSSP AAAAAAPFGP SGHHVLVGLG GGLPGRIPQG KRFRTRFSPE  180
QKARMKEVCE RLGWRMQKRD EGLVAECCRE IGVSRGVFKV WMHNNKHNFL GGPSSRRAAT  240
GGAAGGAPPD GGGDSEEASS CRADDGAADA FANGAGDRAV KRPSSKAQGD G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181712351879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937133.13e-58zinc-finger homeodomain protein 9
SwissprotQ9SEZ15e-47ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A427AFV32e-59A0A427AFV3_ENSVE; Uncharacterized protein
STRINGGSMUA_Achr6P02700_0014e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-27homeobox protein 22
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]