PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0000500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family YABBY
Protein Properties Length: 165aa    MW: 18425.9 Da    PI: 9.194
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0000500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1879.9e-5861545170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                       ++eq+Cy+ C+fCn ilavsvP +slf++vtvrCGhC +l svn+a a + l+++ +        ++++++++++ +++ v+ ++sa+     
  Spipo21G0000500   6 AAAEQLCYIPCSFCNIILAVSVPCSSLFEIVTVRCGHCGNLWSVNMAAALHSLSTSWQ--------QQQQQQQQQNVITVGVSPRSSATC---- 87 
                      5789*******************************************99999988775........233333333333333332222222.... PP

            YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         s  +++++ + +   r Pek+qrvPs yn+fikeeiqrika+nP+i+hreafs+aaknWahfP+i fgl
  Spipo21G0000500  88 ---S--KRHDSRKLHAGLRAPEKKQRVPSVYNQFIKEEIQRIKANNPEITHREAFSTAAKNWAHFPHIQFGL 154
                      ...2..233444555679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-657154IPR006780YABBY protein
SuperFamilySSF470951.7E-696148IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
STSTPAAAEQ LCYIPCSFCN IILAVSVPCS SLFEIVTVRC GHCGNLWSVN MAAALHSLST  60
SWQQQQQQQQ QQNVITVGVS PRSSATCSKR HDSRKLHAGL RAPEKKQRVP SVYNQFIKEE  120
IQRIKANNPE ITHREAFSTA AKNWAHFPHI QFGLMLENNN QGRLP
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545521e-74AC254552.1 Spirodela polyrhiza clone GNAS837-C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179882.12e-73axial regulator YABBY 5
SwissprotQ8GW462e-70YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A2P6RIV25e-72A0A2P6RIV2_ROSCH; Putative transcription factor C2C2-YABBY family
STRINGXP_008242786.14e-72(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-71YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]