PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0004000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 166aa    MW: 18238.1 Da    PI: 10.5634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0004000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.31.1e-1583143161
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      +ke kr +r+ +NR++A+  R+RKka++  Le kvkeLe+ N++L ++l++l++e + l+ 
  Spipo21G0004000  83 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEAKVKELEKRNSELEERLSTLQNENQMLRH 143
                      5899****************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000413.8E-6621IPR001630cAMP response element binding (CREB) protein
PRINTSPR000413.8E-68298IPR001630cAMP response element binding (CREB) protein
SMARTSM003384.2E-1583147IPR004827Basic-leucine zipper domain
PfamPF001707.6E-1484144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.7685148IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-1387145No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-1687147No hitNo description
CDDcd147042.23E-1688139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PRINTSPR000413.8E-6100120IPR001630cAMP response element binding (CREB) protein
PRINTSPR000413.8E-6120137IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQEQATSSLP SSSERSSSSA VHQVKEGIES DDEIRRVPDF GGEPPAGTSI SGREVSSAAA  60
TERRQAASSE AGLQRKRGRD PADKEHKRLK RLLRNRVSAQ QARERKKAYL NDLEAKVKEL  120
EKRNSELEER LSTLQNENQM LRHILKNTSV GRRGSTSSAN AEGSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-15108147342Transcription factor HY5
2oqq_B2e-15108147342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914895.15e-71transcription factor HY5
SwissprotQ9SM502e-63HY5_SOLLC; Transcription factor HY5
TrEMBLA0A1D1YT452e-83A0A1D1YT45_9ARAE; Transcription factor HY5
STRINGXP_010048982.19e-70(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-61bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]