PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0011400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 687aa    MW: 78359.4 Da    PI: 7.1018
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0011400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2152145190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      +fY+++A++ GFs+r+++sk + ++   ++kr++vC + g + ++k+++ k++r+++++r++C+a++++kk+     ++w+v ++++ HnHel 
  Spipo21G0011400  52 EFYCNFARKNGFSIRRERSKGNqTHPLGVYKRELVCHRAGLNLPRKTADLKRQRNKKSSRCNCEAQMVIKKDVksgLAQWVVVQFSNVHNHELL 145
                      6*****************99883344569*******************999********************98655679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1852145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.433477525IPR007527Zinc finger, SWIM-type
SMARTSM005750.0069500527IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MEEEEAGAAA PDSGGPSEAD LPGSPQAPSE IPMVDAIPYV GQSFRSDDEA EEFYCNFARK  60
NGFSIRRERS KGNQTHPLGV YKRELVCHRA GLNLPRKTAD LKRQRNKKSS RCNCEAQMVI  120
KKDVKSGLAQ WVVVQFSNVH NHELLDSNEV RYLPAYRNIS AVDRERILAL SKAGCNVHLI  180
MRALELEKGV KPGTLTFTER DLRNFLQSSK NLNEENEGAE LLKVCKSMKE KNPDFRYDYT  240
LDESNKLENI AWSYGESISA YKSFMHLMNG RLPQTLFTDL DLELTDAVLR EWPFTKHVFS  300
IWHVLSKFPS WFSALSYRYE KFKSEIHRLY YLDTVEEFEH DWQHMVMEFG LITDRHINLL  360
FSHRASWALP YLRGSFSAGL MTIGVSMSIT SFFKEFLNSK TRLKDFVEQV CLAVDFQSQA  420
AEEAIIRQKF QNVKMKTCMP MEENASTILT PYAFYVLQSE IVLSMQYAVF ETEKDNYLVR  480
HHLRTDGGHI VRWMPLEEEV HCSCKQFECS GVLCGHAIRV LSLKNYFFLP ERYLPVRWRL  540
ESSLFPKSKG NNYRSQSLRT LATMLIQEST MTKERFSYAQ AQMNKLLMYV KCMPTIDGIA  600
FTMPVADSTA NCAAGVDCIT AVDSVLSDCQ PDAIVNPSQA NKWRKRLKKR VVPKEASEVA  660
ETVNGASAEV VEATNGPLRQ ADNDGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1643649RKRLKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792978.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1D1Y9B70.0A0A1D1Y9B7_9ARAE; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_008792978.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-176FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]