PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0020400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 213aa    MW: 22762.3 Da    PI: 6.355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0020400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.2e-29101157258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      +Dgy+WrKYG+K+vk+s++ r+YYrC++ gC vkk+ver+a+d ++v+++Yeg+Hnh
  Spipo21G0020400 101 EDGYKWRKYGKKSVKSSPNLRNYYRCSTGGCGVKKRVERDADDASYVITVYEGTHNH 157
                      8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3086159IPR003657WRKY domain
SuperFamilySSF1182903.92E-2692159IPR003657WRKY domain
PROSITE profilePS5081128.27795160IPR003657WRKY domain
SMARTSM007741.2E-31100159IPR003657WRKY domain
PfamPF031062.6E-23101157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MESDPFSPAS AGASAALEQL LFQVSDHLAF DEGSQPGGSL PLAVAREDES RPLAAANGTD  60
NSIMVEQTSS RMECEGVSKR EKMDSRPRIG FRTMSTIDVL EDGYKWRKYG KKSVKSSPNL  120
RNYYRCSTGG CGVKKRVERD ADDASYVITV YEGTHNHLPP GAVYYPVPLS GQHATMAAGG  180
ATAAAGWGSS SSAMITTPLD PQRWETNGAH LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2488161276WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935281.12e-48probable WRKY transcription factor 51
TrEMBLA0A1D1YBM46e-54A0A1D1YBM4_9ARAE; Putative WRKY transcription factor 51 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-37WRKY DNA-binding protein 51