PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0027800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 277aa    MW: 30249.7 Da    PI: 9.5761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0027800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.8e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G g W+tI r          R+  ++k++w++
  Spipo21G0027800  5 KQKWTAEEEEALRAGVEKHGAGKWRTIQRDPEfsrclASRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.733161IPR017930Myb domain
SuperFamilySSF466892.44E-16258IPR009057Homeodomain-like
SMARTSM007173.2E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-14556IPR009057Homeodomain-like
PfamPF002491.7E-8555IPR001005SANT/Myb domain
CDDcd116604.83E-21656No hitNo description
SMARTSM005262.5E-11111177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.7E-12113189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.253113182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.72E-13114194IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd000733.35E-10115194No hitNo description
PfamPF005381.8E-8115177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGAPKQKWTA EEEEALRAGV EKHGAGKWRT IQRDPEFSRC LASRSNIDLK DKWRNMSLCG  60
GQGSREKTRV PRIKGTTGAS LPITQTPTSS APVKLGGLSV TTDLSKNVQE QKISPKYITL  120
IIEALSDVKE PQGMDVGAIC SYIEQQHDDV PPNFRRLLGS KLRRLVAQNK IEKVEKGYKL  180
KEPFVTKTPT PKEKDPGHRP RPLPSPVATS SVDAVGDAAI AAAYKIAEAE AKSFLASEAV  240
KEAERVSKMA EETDSLLMLA REIFEQCARG EILTVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910098.11e-129single myb histone 4
SwissprotQ8W1199e-78SMH4_MAIZE; Single myb histone 4
TrEMBLA0A1D1ZC551e-147A0A1D1ZC55_9ARAE; Histone H1
STRINGGSMUA_Achr4P08670_0011e-127(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.25e-56MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]