PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo21G0029600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 251aa MW: 26142.8 Da PI: 7.8658

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo21G0029600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.3e-40	21	81	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprCdstntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGgg+rkn k+s Spipo21G0029600 21 EEQHLRCPRCDSTNTKFCYYNNYNLSQPRHFCKDCRRYWTKGGALRNIPVGGGTRKNSKRS 81 68999****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	11	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-33	23	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKDPSTAAFQ AAIKAPKFPQ EEQHLRCPRC DSTNTKFCYY NNYNLSQPRH FCKDCRRYWT 60 KGGALRNIPV GGGTRKNSKR SAPSSSSSSS HTKRSISSPS PAAATHAAAE AGETAAASSI 120 STIQFPKLEA IPSVYSSTDA DRQLLDFTGS FSSLLTSHGH FGSLLDSFHA GGAGVLGLPG 180 SIDMGRPIGN PSLDLHSPGD GGDMSGAPAA DAQQAPLGDN LLGLPADSSC WSGSSGWSDL 240 SIYTPGSNFQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	6e-44	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797869.1	2e-68	dof zinc finger protein DOF3.1-like
TrEMBL	A0A1D1ZGX4	1e-69	A0A1D1ZGX4_9ARAE; Dof zinc finger protein DOF1.7 (Fragment)
STRING	XP_008797869.1	7e-68	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-35	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Spipo21G0029600