PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0033300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 172aa    MW: 19097.8 Da    PI: 5.941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0033300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.56.1e-1163118149
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk 49 
                      lp+G++F+Ptd+el+ e+L++kv++ +      ++++   i+   +i++++P++Lp+
  Spipo21G0033300  63 LPAGVKFDPTDQELI-EHLEAKVSSGEskshplIDEFIPtIEGEdGICYTHPEKLPA 118
                      799************.99*****99996665443333333666646*********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-1057120IPR003441NAC domain
PROSITE profilePS5100510.64863171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MNPAQICSIS SCDLLDAKIG QHQRFGTKHC PGCGNELERK PKVETNEAGF GDYPCRLKDW  60
VGLPAGVKFD PTDQELIEHL EAKVSSGESK SHPLIDEFIP TIEGEDGICY THPEKLPAVR  120
PLLSVTISRT EMVVDAAVEF VESITLRGDG KDIQSGTIQF HKVVRLRWWR R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244407.11e-46PREDICTED: uncharacterized protein LOC104588253 isoform X1
RefseqXP_010244410.11e-46PREDICTED: uncharacterized protein LOC104588253 isoform X1
SwissprotQ9M0F88e-42NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U7YVD22e-45A0A1U7YVD2_NELNU; uncharacterized protein LOC104588253 isoform X1
STRINGXP_010244406.14e-46(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-44NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]