PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0036200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 273aa    MW: 29272.6 Da    PI: 7.6981
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0036200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.9e-17196229134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C +t Tp+WR gp g+ktLCnaCG++y++ +
  Spipo21G0036200 196 CLHCAATRTPQWRAGPMGPKTLCNACGVRYKSGK 229
                      99*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-701271IPR016679Transcription factor, GATA, plant
SMARTSM004013.1E-16190240IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558190226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14192253No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14192229IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.02E-12195242No hitNo description
PROSITE patternPS003440196221IPR000679Zinc finger, GATA-type
PfamPF003207.7E-15196229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEQQGRPSET FAVEDLLDFP LEDCGSDEAP VSSADSAIIS LGGSFNSPHG GETYLSGEPA  60
CSRFADAGLS GEDLCPPCEE LAELEWLSNF VEESFHGDDL QKLQLTSPFN PSSSSSAQSG  120
RAALFCKFRV PGKARSKRRR GSPLSSWSSF RPVISPNASS SSPPHETISP ASSSSTPRKA  180
PTGKRKEQYV PEGRKCLHCA ATRTPQWRAG PMGPKTLCNA CGVRYKSGKL APEYRPAASP  240
TFVPSQHSNS HQKVLELRQR KELTAAGLSP EF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924658.12e-80GATA transcription factor 12
TrEMBLF6HYB51e-73F6HYB5_VITVI; GATA transcription factor
STRINGVIT_09s0002g03750.t012e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-51GATA transcription factor 9