PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0007100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 628aa    MW: 68389.6 Da    PI: 4.7286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0007100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13456500554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h  +ErrRR+++N++f +Lr+++P       +K++Ka+iL  ++eY+k+L
  Spipo22G0007100 456 HVLAERRRREKLNERFITLRSMVPCV-----TKMDKASILGDTIEYLKKL 500
                      7789*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-4921198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.193451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18453516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11456500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17456515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-15456505No hitNo description
SMARTSM003531.2E-16457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MSAHLMNDDG VARSGGGGAA LQQMLQMVVQ RLQWTYSLFW QLCPQQGVLV WADGYYNGAI  60
KTRKMVQPVE ATAEEVSLQR SQQLRELYES LSLGEDNQPS RRPCAALSPE DLTESEWFYL  120
MCISFFFPPG VGVPGKAFEK QQAVWLAGAN EVDSKVFSRA ILAKTVVCVP VGDGVLEVGT  180
TDRVEEDQSL IHLMKSFFSG YRHQPLHGNK PALSEHSTST PAAANDGRRQ HLRPPSLAAI  240
PQPPPPADLH RYDDHHHGGD DDDDDDDDDD DEDEEEEPES SSDSGNGGGG KAEPTEMVQL  300
QTPEEILLGS PEDCSNELDA DLQMLALCRA AAVAGGGGDS AGGMQSAMSE EDAHYSQTVS  360
TILQHNPTRW AESCSSGRLL ELPRQSAFST WTGAAAATAG GGATQWLLKR ALHGVPYLHD  420
RCKDENDSPR PAEVEGAPRF RRGGGGAPPE EMNAGHVLAE RRRREKLNER FITLRSMVPC  480
VTKMDKASIL GDTIEYLKKL LRRIQELEVQ MKAMEAGRRT SASGEAPQPF VRGWAPLGEP  540
EKKKLRAIGT VGPEISVQVS IIEADALLEL RCPNRDGLLL RLLQTVHDLG LETTSVQSSV  600
ATDVLVAQIR AKELMGSTKL NNFENVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-19211999193Transcription factor MYC3
4rqw_B8e-19211999193Transcription factor MYC3
4rru_A2e-182019247225Transcription factor MYC3
4rs9_A8e-19211999193Transcription factor MYC3
4ywc_A2e-182019247225Transcription factor MYC3
4ywc_B2e-182019247225Transcription factor MYC3
4yz6_A8e-19211999193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464ERRRRE
2460465RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981704.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3S9XA600.0A0A3S9XA60_ANTAD; Basic helix-loop-helix transcription factor 1 (Fragment)
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-80bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]