PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0014700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 213aa    MW: 22634.3 Da    PI: 6.8004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0014700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-1671119355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r++  rg+W+AeIrdp++     r +lg++  +e+Aa+a++aa+++++g
  Spipo22G0014700  71 YRGIRRRA-RGKWAAEIRDPRK---GVRAWLGTYSNPEDAARAYDAAAREIRG 119
                      9****887.8*********954...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-2070128IPR016177DNA-binding domain
PROSITE profilePS5103222.65570127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2870127IPR001471AP2/ERF domain
SMARTSM003802.0E-3070133IPR001471AP2/ERF domain
PfamPF008477.5E-971119IPR001471AP2/ERF domain
CDDcd000181.23E-1571128No hitNo description
PRINTSPR003671.8E-107182IPR001471AP2/ERF domain
PRINTSPR003671.8E-10109129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MCGGAIISEF IAFREAALRR GGDPTKKGLT SSRGGGGPDA LRCSGFEGDP RPWGSDNLSP  60
APEKKVEKKA YRGIRRRARG KWAAEIRDPR KGVRAWLGTY SNPEDAARAY DAAAREIRGK  120
KAKLNFPAGE PAPPPVPEKS DEPAAAEERP SDAELKQRIS SLEYLLGLEP DEGSSGVEAA  180
VGGGALDGLS PSDDVAMALE RDHHLLDLLH NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-166716511110Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-21ERF family protein