PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo22G0018300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 197aa MW: 21771 Da PI: 9.8776

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo22G0018300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	8e-34	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Spipo22G0018300 52 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLKVMGVPGLTIYHVKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.346	51	109	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-17	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-26	52	107	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.9E-32	52	107	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-8	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-24	139	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGGEKELKMY SKKFATMALM PHRSQGDEQL SNIGALRGSP VNSTASSGVG GKQRLRWTSD 60 LHDRFVDAIT QLGGPDRATP KGVLKVMGVP GLTIYHVKSH LQKYRLAKYL PESPADGLKD 120 EKKDCSDGLG NLDPASGLQI TEALKMQMEV QKRLHEQLEV QRQLQMRIEA QGRYLQKIIE 180 EQQKLGSYVG VNEPGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-26	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922093.1	1e-101	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-72	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1D1XPS5	1e-103	A0A1D1XPS5_9ARAE; Myb family transcription factor APL
STRING	XP_010251692.1	1e-100	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-75	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo22G0018300