PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0018400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 335aa    MW: 37225 Da    PI: 9.0312
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0018400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-104989545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Spipo22G0018400 49 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 89
                     6679************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-945108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2894791IPR004827Basic-leucine zipper domain
PfamPF001706.4E-74989IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-74992No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-85194No hitNo description
PROSITE patternPS0003605267IPR004827Basic-leucine zipper domain
PfamPF141442.3E-34132206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADTSPRTDT STDVDTDAHN QKYESGLRNA IVAASDSSDR SKEKTGDQKI LRRLAQNREA  60
ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGIFIS GTGDQAHSMS GNGALAFDVE  120
YARWLEEHNK KINELRAAVN SHASDNDLRG IVDSIMAHYD EVFRMKGVAA KADVFHILSG  180
MWKTPAERCF LWLGGFRPSE LLKLLVNHLE PLTEQQMVGL CNLQESSQQA EDALSQGKEA  240
LQQSLAETLA SGSLGPTGSS GDVANYMGQM AMAMGKLGTL ESFIRQADNL RQQTMQQMHR  300
ILTTRQSARA LLAIGDYFSR LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026425226.10.0transcription factor TGAL1-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1D1XQS30.0A0A1D1XQS3_9ARAE; Transcription factor HBP-1b(C1)
STRINGGorai.007G352600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-152TGACG motif-binding factor 6