PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0034400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 201aa    MW: 22901 Da    PI: 9.4827
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0034400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-19666257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+++t+eql  Lee+++   r+p+a +++ ++++l    +++ ++V++WFqN++a++++
  Spipo22G0034400  6 STRWCPTPEQLMMLEEMYRGgLRTPNALQIQSITAHLsyygKIEGKNVFYWFQNHKARDRQ 66
                     58*****************99*************************************996 PP
2Wus_type_Homeobox116.41.3e-37567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ+++Lee+y+ GlrtPn+ +iq ita+L+ yGkie+kNVfyWFQN+kaR+rqk
    Spipo22G0034400  5 PSTRWCPTPEQLMMLEEMYRGGLRTPNALQIQSITAHLSYYGKIEGKNVFYWFQNHKARDRQK 67
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.556267IPR001356Homeobox domain
SMARTSM003892.6E-4471IPR001356Homeobox domain
PfamPF000465.5E-17666IPR001356Homeobox domain
SuperFamilySSF466895.99E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-6866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPQAPSTRWC PTPEQLMMLE EMYRGGLRTP NALQIQSITA HLSYYGKIEG KNVFYWFQNH  60
KARDRQKLRK RLNRHYQMLP QQHHLAQQPS PTHHQLEASN AFLRQSPPQF LQQGLREEVV  120
EAMSLISKHG RFEREEEQQR LEETSPTASG YEWRMLTGAS TGAPSSCKPL RTLELFPTGI  180
TGLRGDCICS KSSSCSASTK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107894.11e-64WUSCHEL-related homeobox 3-like
TrEMBLD9N1C04e-56D9N1C0_9POAL; PRESSED FLOWER a
STRINGXP_008776170.14e-56(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-41WOX family protein