PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo22G0039600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 120aa MW: 13585.2 Da PI: 9.3471

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo22G0039600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.4e-06	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Spipo22G0039600 28 YSCSFCGREFRSAQALGGHMNVH 50 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.68E-7	25	55	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.2E-5	26	52	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.217	28	55	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-6	28	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	28	50	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	30	50	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
AVASWEEKAI GEDSASQLGE YAWPPRSYSC SFCGREFRSA QALGGHMNVH RRDRARLKQS 60 SAGNEEKRRL LLRQQQHHLQ NSFSKSRCTP YEVVAPPRSP SLDNCGDQKM ICLSYSSRLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	23	50	2	29	superman protein
2l1o_A	2e-13	23	50	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022744579.1	3e-29	zinc finger protein 10-like
TrEMBL	A0A200R533	7e-28	A0A200R533_9MAGN; Zinc finger protein
TrEMBL	A0A2I0WAY3	5e-28	A0A2I0WAY3_9ASPA; Putative transcriptional regulator RABBIT EARS
STRING	EOY07444	1e-27	(Theobroma cacao)
STRING	GSMUA_Achr2P16470_001	9e-28	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9594	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-24	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	Spipo22G0039600