PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0001100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 239aa    MW: 26541.4 Da    PI: 9.9095
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0001100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573994.3e-3121117297
           DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       fqr+w + Dei+lL+ +++f ++++g++p+  +d fy+f+   + +k+sk+q+++K+rrLKkK++++ +++++g +p+f+k+hd+ +felskk
  Spipo23G0001100  21 SFQRVWMQVDEIALLKSMVKFqATQNGADPTGALDTFYNFICPTMRVKFSKTQVSDKMRRLKKKYETNHRRSRKGADPAFAKSHDRVSFELSKK 114
                      69*******************4457899****************************************************************** PP

           DUF573  95 iWg 97 
                      iW 
  Spipo23G0001100 115 IWA 117
                      **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-2822116IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDGAAKSTRT AAAGIVSPAR SFQRVWMQVD EIALLKSMVK FQATQNGADP TGALDTFYNF  60
ICPTMRVKFS KTQVSDKMRR LKKKYETNHR RSRKGADPAF AKSHDRVSFE LSKKIWAPSQ  120
LAVPSPSDDR QDDLVVNTAA AHARDRALMP LVDVGDAGER ARPFLREAIN LLEMYSGNWL  180
SSQLLTSMLE HNPVMSDALD ERCGKHFLAS VNLMLEQGKI KEDLLKCAAD NISSILNR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-21DNA-binding storekeeper protein-related transcriptional regulator