PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo23G0004500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WOX

Protein Properties

Length: 129aa MW: 14728.6 Da PI: 9.9204

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo23G0004500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.6e-21	20	80	1	56
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e+ Spipo23G0004500 20 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISSHLsafgKIESKNVFYWFQNHKARER 80 568***************99***********************************98 PP
2	Wus_type_Homeobox	111.2	5.7e-36	20	81	2	63
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++ RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gkie+kNVfyWFQN+kaRer Spipo23G0004500 20 KCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISSHLSAFGKIESKNVFYWFQNHKARERL 81 578*********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.511	17	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-11	19	85	IPR009057	Homeodomain-like
SMART	SM00389	4.3E-4	19	86	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-18	21	80	IPR001356	Homeobox domain
CDD	cd00086	6.66E-5	23	83	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.0E-8	23	80	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0010078	Biological Process	maintenance of root meristem identity
GO:1902459	Biological Process	positive regulation of stem cell population maintenance
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
AAASCGGGNS KTTTAGGGSK CGRWNPTAEQ VKVLTELFRA GLRTPSTEQI QRISSHLSAF 60 GKIESKNVFY WFQNHKARER LHHKKRRREP PHLPLGHHHY YPDCAEIFPF SERGNMDERE 120 RETLELFPL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF038352	6e-61	KF038352.1 Aegilops bicornis isolate CIae47 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038353	6e-61	KF038353.1 Aegilops bicornis isolate CIae70 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038355	6e-61	KF038355.1 Aegilops searsii isolate PI599160 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038356	6e-61	KF038356.1 Aegilops searsii isolate PI599145 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038357	6e-61	KF038357.1 Aegilops longissima isolate PI604123 wuschel-related homeobox protein (WOX5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642985.1	1e-44	WUSCHEL-related homeobox 9
Swissprot	Q8W0F1	1e-45	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	A0A0D9YHF9	1e-44	A0A0D9YHF9_9ORYZ; Uncharacterized protein
STRING	OGLUM01G41580.1	2e-45	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	4e-35	WUSCHEL related homeobox 5

Link Out ? help Back to Top
Phytozome	Spipo23G0004500

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]