PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0015600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 656aa    MW: 72326.1 Da    PI: 9.004
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0015600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07550599147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+ lG+g+W+ +  +     k+Rt  ++k++w ++
  Spipo23G0015600 550 RRPFSVSEVEALVQAVENLGTGRWRDVKLCAFenaKHRTYVDLKDKWKTL 599
                      678999*********************999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.327545604IPR017930Myb domain
SMARTSM007172.5E-6549602IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-9550600IPR009057Homeodomain-like
SuperFamilySSF466898.97E-15551632IPR009057Homeodomain-like
CDDcd116606.83E-15551601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MRRVVGRAAQ LRQIMLLRRR LDYGFNGYQV PFLPRGPRSA RGKRSTCEKA TEDQMCPFEL  60
LASVAGKLLV EGNSPTPSNE KNGESKNTFT KYIVKEEEVD EAKASNVGVY VQGSYNDVTV  120
ASEAGFPGQT QIVTMKECSQ ASSSASLGHC PIMIKRDPSE DLASVEESLV NGSKDELERQ  180
STVTAGSRHS KVEDEIPSPL RFECRQNKIG SLGDVSDACL EDLMNVDAKA PLLSSESSVE  240
EPLHGDRIPH STPFPKCLKD LGLSVDRDDD EKSSGCTQPC NTPSKSARPP RIGDRQKLKS  300
FSSKFWKFGR AEAKDGGFCN TDEELKPFSR SRKMVYTRQR TQRCTFKRRK LFERVPVSMS  360
DGTVTTEGNG ASSSLTGMKT AFESEVYQVK LGIKSFKVPE LLIKMPETAT RTVVEAVNAI  420
LCGGFRVGVQ LQGKRLRDDS KTLTQAGISH GDGLDNLSFT LEPKAPHTRK QLTANTPICL  480
IAGLQVLRPY YYHHSLPQSD HDSAPSPGHA MSAEDAPDSR ALAIVPAMEI EALAVVPYHR  540
RGETAPRRIR RPFSVSEVEA LVQAVENLGT GRWRDVKLCA FENAKHRTYV DLKDKWKTLV  600
HTAKISPQQR RGEPVPQELL DRVLAANAYW SQHQAKLHLP KHPPPPGTPP PSLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-515406397106Telomere binding protein TBP1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937605.10.0telomere repeat-binding protein 2 isoform X2
TrEMBLA0A1D1YLU90.0A0A1D1YLU9_9ARAE; Telomere repeat-binding protein 3
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-92TRF-like 2