PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0024200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 160aa    MW: 17047.6 Da    PI: 9.0927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0024200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00112547123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Spipo23G0024200 25 FECKTCNRKFPSFQALGGHRASH 47
                     89**********99999998887 PP
2zf-C2H212.80.000357193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg  Fs    L  H+r+H
  Spipo23G0024200 71 HECSICGLEFSVGQALGGHMRRH 93
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.85E-82393No hitNo description
PfamPF139121.3E-122449IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8272552IPR007087Zinc finger, C2H2
SMARTSM003550.152547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
PfamPF139121.1E-107095IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4947198IPR007087Zinc finger, C2H2
SMARTSM003550.167193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASVLMLLSR GAGGEEAAHH SGRVFECKTC NRKFPSFQAL GGHRASHKKP RLAAGDPHGA  60
AQAHAGKPRV HECSICGLEF SVGQALGGHM RRHRAAAEGF TLALLEKKPS AVEKEKKGAA  120
AAAAPRYLDL DLNQPPMDSE MDFRPLPFSL GFPMIDCLH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922390.13e-54zinc finger protein ZAT11
SwissprotQ681X48e-30ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2H3Z3092e-51A0A2H3Z309_PHODC; zinc finger protein ZAT12
STRINGXP_008807730.14e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-32C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]