PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0024500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 121aa    MW: 12728.7 Da    PI: 9.7283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0024500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++Fs+   L  H  +H
  Spipo23G0024500  4 FECKTCHRRFSTFQALGGHRTSH 26
                     89**********99999888877 PP
2zf-C2H213.40.000224769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg +F     L  H+r+H
  Spipo23G0024500 47 HECTVCGLVFAAGQALGGHMRRH 69
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.58E-8369No hitNo description
PROSITE profilePS501579.785431IPR007087Zinc finger, C2H2
PfamPF139122.4E-11429IPR007087Zinc finger, C2H2
SMARTSM003550.81426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-44369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-104671IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3284774IPR007087Zinc finger, C2H2
SMARTSM003550.154769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MVMFECKTCH RRFSTFQALG GHRTSHRRQP NLPAACLRPC RKSEKAHECT VCGLVFAAGQ  60
ALGGHMRRHK AAAAAAAAAA AAEGVTSPPV GSPASLFFRL DLNLPPMEDE ASFLTLGPGK  120
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_002533000.12e-27(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-24C2H2 family protein