PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0039200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 110aa    MW: 12036.2 Da    PI: 7.7373
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0039200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-3057106251
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      prlrWtp+LH++Fv+ave+LGG+++AtPk il++m+v gL+++hvkSHLQ
  Spipo23G0039200  57 PRLRWTPDLHRCFVHAVERLGGQDRATPKLILQMMNVRGLSIAHVKSHLQ 106
                      9************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2853106IPR009057Homeodomain-like
PROSITE profilePS512949.19553109IPR017930Myb domain
SuperFamilySSF466895.2E-1554106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2256106IPR006447Myb domain, plants
PfamPF002493.3E-958106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEETGRSASP EKNPSDEEED GDGNHNNGGS SSNSTVEESE RKGSPGSVRQ YNRSKNPRLR  60
WTPDLHRCFV HAVERLGGQD RATPKLILQM MNVRGLSIAH VKSHLQLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1858106351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1858106351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1858106351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1858106351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1856106252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806053.23e-46probable transcription factor KAN4 isoform X2
SwissprotQ700D99e-26MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A1D1YHN53e-47A0A1D1YHN5_9ARAE; Putative Myb family transcription factor At1g14600
STRINGXP_008806053.14e-47(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-32G2-like family protein