PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo24G0005700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 428aa    MW: 45792.6 Da    PI: 6.0168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo24G0005700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3091.1e-94454192374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                      +elLlecA avs g +++a++l++ l+el+sp+gd+ qRl+ayf++AL a  ++s ++  +al++  ++++ s e++  + l f++vsP+ +f+
  Spipo24G0005700  45 TELLLECAAAVSGGATARANELMWLLNELSSPYGDTHQRLTAYFLRALLALSSSSATSSLRALAAAGDRNR-SFESTRRTALrFQDVSPWCTFG 137
                      589**********************************************9999988888888877777643.44444444446*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rle 187
                      h++ N aIlea+ege  +Hi+D++ + ++QWp++l+aLa+R++++p+lR+T+v    +  ++  +e+g rL+kfA+ +g+pf+f++++++ + +
  Spipo24G0005700 138 HVASNGAILEALEGEPFLHILDLSNTFCTQWPTFLEALATRSGDAPRLRLTAVFG-GAALHQVAKEIGARLKKFARLMGIPFDFRAVHHDgDPA 230
                      *****************************************************98.4568999***********************99988999 PP

             GRAS 188 dleleeL.....rvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsl 271
                      +l++e+L     +     g  laVn+v  lh ++  s+   ++r+++  ++++l+Pk+v+vve+ ad+  e   +F++ f+e+l++++a fdsl
  Spipo24G0005700 231 ELDFESLggggtA--AsgGAGLAVNCVNTLHGVP--SG---ERRNAMAAALRRLRPKIVTVVEEVADLRPEecgDFARSFAESLRFFTAYFDSL 317
                      *******776433..256999************9..34...34669999****************9994433559******************* PP

             GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkd 364
                      e+++p++s+er  +E++  +r+i+++va   a+++er+et+++W++r+++aGF+p+pls+++ ++ ++ll+++  +g+++     + + l Wk+
  Spipo24G0005700 318 EESFPKTSNERLALEKA-AERAIMDLVAGDPARSTERRETAASWSARMSAAGFSPLPLSDDVGDDLSALLKRYR-EGWSMAAPPPAGTfLLWKE 409
                      *****************.********************************************************.99999877555554***** PP

             GRAS 365 rpLvsvSaWr 374
                      +p+v++SaW+
  Spipo24G0005700 410 QPVVWASAWK 419
                      *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.70718399IPR005202Transcription factor GRAS
PfamPF035143.8E-9245419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASDDFSAAS STTPPSPTRG GSFALPHLTD LTVDLHAPPS GTWATELLLE CAAAVSGGAT  60
ARANELMWLL NELSSPYGDT HQRLTAYFLR ALLALSSSSA TSSLRALAAA GDRNRSFEST  120
RRTALRFQDV SPWCTFGHVA SNGAILEALE GEPFLHILDL SNTFCTQWPT FLEALATRSG  180
DAPRLRLTAV FGGAALHQVA KEIGARLKKF ARLMGIPFDF RAVHHDGDPA ELDFESLGGG  240
GTAASGGAGL AVNCVNTLHG VPSGERRNAM AAALRRLRPK IVTVVEEVAD LRPEECGDFA  300
RSFAESLRFF TAYFDSLEES FPKTSNERLA LEKAAERAIM DLVAGDPARS TERRETAASW  360
SARMSAAGFS PLPLSDDVGD DLSALLKRYR EGWSMAAPPP AGTFLLWKEQ PVVWASAWKP  420
SPPPPPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-1453642119421Protein SHORT-ROOT
5b3h_E1e-1453642119421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028764266.11e-158protein SHORT-ROOT-like
SwissprotA2YN561e-147SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A1D1Z6P80.0A0A1D1Z6P8_9ARAE; Protein SHORT-ROOT 1 (Fragment)
STRINGXP_010272682.11e-156(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-115GRAS family protein