PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo24G0006700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 235aa    MW: 24330.6 Da    PI: 8.8226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo24G0006700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001979101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cgk F++   L  H  +H
  Spipo24G0006700  79 HKCNVCGKAFPSYQALGGHKASH 101
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.61E-978101No hitNo description
SMARTSM003550.01379101IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-1379103IPR007087Zinc finger, C2H2
PROSITE profilePS501579.80679101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576676.61E-9134161No hitNo description
PfamPF139121.6E-10138163IPR007087Zinc finger, C2H2
PROSITE profilePS501578.912139161IPR007087Zinc finger, C2H2
SMARTSM003550.74139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
VAMVMEAPKV SSMGGACEVA EAHCPETWSK GKRSKRHRFY DRQPTEEEYL ALCLVMLARG  60
GPAERAPPPR ATSPEKLPHK CNVCGKAFPS YQALGGHKAS HRRLVTGAED GVSSSGATAS  120
ASSGSAAAVA APPGGGRVHQ CSICLRCFPS GQALGGHKRL HYDGGTTAHN ATGAAVSSSS  180
GTSSTLRNFD LNLPALPEFL ADGAATALRR CVAAEEDEVQ SPLAFKKPRL LIPA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792675.19e-78zinc finger protein ZAT10
TrEMBLA0A2H3Y3332e-76A0A2H3Y333_PHODC; zinc finger protein ZAT10
STRINGXP_008792675.13e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-37salt tolerance zinc finger