PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo24G0006900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 153aa    MW: 16349.8 Da    PI: 8.1168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo24G0006900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260896e-282103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+  +     p++q++++ +v+k+FG++ +++ ++++p + r+++++sl++eA+ r+ dPv Gavg+++++++ l++
  Spipo24G0006900   2 SCSGCRVLRKGCSESCVLRTSLqwidsPEAQAHATLFVAKFFGRTGLISSISSVPASLRPALFRSLLFEACGRTVDPVAGAVGLLWTGNWYLCE 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l 
  Spipo24G0006900  96 AAVEIVLS 103
                      **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2951107IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSCSGCRVLR KGCSESCVLR TSLQWIDSPE AQAHATLFVA KFFGRTGLIS SISSVPASLR  60
PALFRSLLFE ACGRTVDPVA GAVGLLWTGN WYLCEAAVEI VLSGGRPSPP PNGDAGKRVA  120
VEPSESDTTR ADRWGRVTDM AEETKKLLML FT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025698197.15e-60LOB domain-containing protein 38
SwissprotQ9SN235e-55LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445ESX91e-58A0A445ESX9_ARAHY; Uncharacterized protein
STRINGGLYMA01G40010.11e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-57LOB domain-containing protein 38