PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo24G0011700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C3H

Protein Properties

Length: 214aa MW: 23555.8 Da PI: 7.4987

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo24G0011700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.4e-09	177	198	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++++ G+Ck+G++C+++Hg Spipo24G0011700 177 RVCHYYQK-GYCKHGANCRYIHG 198 78****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.028	173	200	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.16E-7	174	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	175	199	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-6	177	198	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-6	177	198	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEKGYEMDLS EATKTILRRI QRIEPELAPK IIEYLLLKVY GDQEVIRMAF GPDLALRPLI 60 SEAKAALSGC RLSVPVNGPP EVHPHVGSYP PTGSADSSSS LALCHSAPPF WDLQTASESQ 120 RALPNLDLNH EFPLGEDNPA HCGKLMCCSY FREYPANGHP KAASMRRSMS MAERSPRVCH 180 YYQKGYCKHG ANCRYIHGGL TANARELGGE DQK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1Y1I1	3e-46	A0A1D1Y1I1_9ARAE; Zinc finger CCCH domain-containing protein 18
TrEMBL	A0A1D1YTI7	3e-46	A0A1D1YTI7_9ARAE; Zinc finger CCCH domain-containing protein 18

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5256	2	2

Link Out ? help Back to Top
Phytozome	Spipo24G0011700