PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo24G0023600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 173aa    MW: 19052 Da    PI: 4.2438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo24G0023600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-143351246
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     lv a+++lG++ W+ Iar+++ gRt++++k++w++
  Spipo24G0023600  3 LVAAHAELGNR-WAEIARRIP-GRTENSIKNHWNT 35
                     99*********.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.624141IPR017930Myb domain
SMARTSM007173.4E-5139IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-9244IPR009057Homeodomain-like
CDDcd001673.07E-9237No hitNo description
Gene3DG3DSA:1.10.10.604.5E-14335IPR009057Homeodomain-like
PfamPF002491.8E-11335IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MALVAAHAEL GNRWAEIARR IPGRTENSIK NHWNTSKRKR LARRKYRSAA TAAGEPHLSV  60
LLEYMNSLDQ LPSAEEGKPG NAAEVGPASE QKVGWTAGWS PAGLEPEDEE DLSIIFDWNN  120
ESSPLPPTPV NEEPVEMIFY GGEVSKVEDD DEGKEIDIDD LISFPADDDP WK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-19myb domain protein 98