PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo24G0031400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

YABBY

Protein Properties

Length: 129aa MW: 14960.9 Da PI: 10.5056

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo24G0031400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	118.7	9.1e-37	21	110	71	164
YABBY 71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 +l+ +k + ++ s++ ++s+s+ ++ +++ene++ v p +rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW hf Spipo24G0031400 21 ILQSQKLRYQEQGSQYGPSSSKSERTPPISFPENERRPVL---P-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSAAAKNWIHFV 110 5555555555555555555555555555444555544444...4.8**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-34	25	112	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	56	106	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.8E-5	64	106	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
VSSQLSNIRP FIRILAVLYH ILQSQKLRYQ EQGSQYGPSS SKSERTPPIS FPENERRPVL 60 PVRPPEKRQR VPSAYNRFIK EEIQRIKASN PDISHREAFS AAAKNWIHFV LIPSDFNFHS 120 DSWGWESGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247851.1	7e-33	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q10FZ7	3e-32	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A1D1XYC3	5e-33	A0A1D1XYC3_9ARAE; Protein YABBY 2 (Fragment)
STRING	XP_010247851.1	3e-32	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	Spipo24G0031400